About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32777242_32777809_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32777242 - 32777809
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TCTGCTTTATTT
Flanking Amino Acid:
VREVQQKYNMGVPVDFQQYE
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.6
34.4
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
86
0.81
0.7
85
29.6
Minor 5ss
36.8
-1.5
3.3
44.3
43.6
Minor BPS
59.4
0.37
1.7
74.81
43.2

Associated Gene:

Gene:
ARHGAP1
Ensembl Gene ID:
ENSAPLG00000014489
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015158
32776000 - 32795291
19292