Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32777888_32778295_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32777888 - 32778295

Intron Length:

408

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCTTGACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTGAT

U12 Branch Point Sequence:

TCTCCCTTGACA

Flanking Amino Acid:

RETIAHLQEHALATEGIFRR

Intron Amino Acid Position:

253

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.9

85.6

31.2

Major BPS

82.5

0.81

0.8

71.4

36.6

Major PPT

75.7

0.58

0.9

71.8

32.8

Minor 5ss

39.1

-1.2

3.4

45.5

Minor BPS

77.7

0.87

1.1

80.23

35.4

Associated Gene:

Gene:

ARHGAP1

Ensembl Gene ID:

ENSAPLG00000014489

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015158

32776000 - 32795291

19292