Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32780513_32781129_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32780513 - 32781129

Intron Length:

617

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAAGC

5'SS Class:

strong_major

3'SS Sequence:

TCTTGTTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTGAT

U12 Branch Point Sequence:

GATTCTTTACCT

Flanking Amino Acid:

TLLILFKPLISFKFGRKIFY

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

69.9

41.1

Major BPS

78.8

0.71

67.6

40.6

Major PPT

89.8

0.89

0.7

87.9

29.4

Minor 5ss

32.4

-2

3.2

43.2

Minor BPS

0.67

1.6

81.83

39.6

Associated Gene:

Gene:

ARHGAP1

Ensembl Gene ID:

ENSAPLG00000014489

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015158

32776000 - 32795291

19292