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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32781822_32782063_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32781822 - 32782063
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
AGTTCATCAGCT
Flanking Amino Acid:
SHQLDHVKLLGYLKFTLDQY
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.8
38.7
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
87
0.83
0.7
84.7
30.2
Minor 5ss
31.6
-2.1
2.7
34.1
41.4
Minor BPS
49.5
0.04
2
73.48
42.6

Associated Gene:

Gene:
ARHGAP1
Ensembl Gene ID:
ENSAPLG00000014489
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015158
32776000 - 32795291
19292