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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32782152_32794534_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32782152 - 32794534
Intron Length:
12383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTCTTT
5'SS Class:
major
3'SS Sequence:
ATTTCATCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTCCCTGTAATC
Flanking Amino Acid:
IARHHIVEVAGDDKYGRKVI
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
71.6
40.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81.2
0.7
0.8
74.8
34.4
Minor 5ss
48.5
-0.1
3.2
73.2
43.6
Minor BPS
48.4
-0.1
2
58.67
41.4

Associated Gene:

Gene:
ARHGAP1
Ensembl Gene ID:
ENSAPLG00000014489
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015158
32776000 - 32795291
19292