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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32806371_32807285_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32806371 - 32807285
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTGACTCGGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
ATCCCTTTGACT
Flanking Amino Acid:
LLHLTLSHDGVFLEKGQALS
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
62.8
0.29
1
58.6
38
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
69.1
0.68
1.2
78.76
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013716
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014291
32806292 - 32816123
9832