About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32809985_32810063_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32809985 - 32810063
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTTAA
U12 Branch Point Sequence:
CCTAGCTTAACC
Flanking Amino Acid:
VWTSKYPHIPKFNATIYPNL
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
58.3
0.21
1.1
49.4
37.6
Major PPT
81.2
0.7
0.7
75.9
26.3
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
59
0.26
1.9
66.73
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013716
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014291
32806292 - 32816123
9832