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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32810195_32811236_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32810195 - 32811236
Intron Length:
1042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTACGCCTC
5'SS Class:
major
3'SS Sequence:
TCTGCCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
TATGACTTAAAT
Flanking Amino Acid:
EREECPIPVCGQDRTTVEFT
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
58.5
46.4
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
79.2
0.66
0.8
69.6
36.7
Minor 5ss
41.8
-0.9
3.3
60
44.7
Minor BPS
63.1
0.49
1.7
79.86
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013716
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014291
32806292 - 32816123
9832