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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32811534_32811956_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32811534 - 32811956
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGAACC
5'SS Class:
major
3'SS Sequence:
CTGTCTCTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
AAGCCTTTTACA
Flanking Amino Acid:
YFEYCDLNYCDSLLEDEYEQ
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
69
35.8
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
78.9
0.65
0.8
76.7
31.9
Minor 5ss
29.8
-2.3
2.8
37.3
39.7
Minor BPS
53
0.09
1.6
60.24
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013716
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014291
32806292 - 32816123
9832