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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32812071_32812367_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32812071 - 32812367
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATCAAA
U12 Branch Point Sequence:
TTTGTTTTGTTT
Flanking Amino Acid:
DDATFGTGEADCGTRPLFEK
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
79.3
31.1
Major BPS
59.9
0.25
1.2
69
34.4
Major PPT
86.7
0.83
0.8
80.5
37
Minor 5ss
33.2
-1.9
2.8
39
46.4
Minor BPS
42.5
-0.5
3.4
73.17
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013716
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014291
32806292 - 32816123
9832