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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32812495_32812910_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32812495 - 32812910
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAA
U12 Branch Point Sequence:
TTAGTCTTAAGT
Flanking Amino Acid:
GDDAELGSSPWQVMLYKKSP
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
64.5
0.36
1.2
57.7
41.3
Major PPT
85.6
0.8
0.8
83.6
31.4
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
64.5
0.53
1.7
80
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013716
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014291
32806292 - 32816123
9832