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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32813546_32813778_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32813546 - 32813778
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
CATTCTGTGATT
Flanking Amino Acid:
VCLPTKEVVQRLMLAGYKGR
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
75.6
0.58
0.9
69.2
36.4
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
51.3
0.12
2
70.92
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013716
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014291
32806292 - 32816123
9832