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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32813958_32815492_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32813958 - 32815492
Intron Length:
1535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTCAC
U12 Branch Point Sequence:
CTTCCCCTACAG
Flanking Amino Acid:
VKVTDNMFCAGYSPEDSKRG
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
54.8
0.12
1.2
58.7
38.1
Major PPT
85.1
0.79
0.6
81.6
23.5
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
45.3
-0.4
2.1
54.92
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013716
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014291
32806292 - 32816123
9832