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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32815564_32815979_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32815564 - 32815979
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTGATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTGCTTTGATT
Flanking Amino Acid:
GDSGGPFVMKNPDDNRWYQV
Intron Amino Acid Position:
556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
77.9
33
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
71.1
0.48
1
69.9
40.6
Minor 5ss
39.4
-1.2
2.9
50.7
45.6
Minor BPS
72.8
0.8
1.3
86.34
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013716
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014291
32806292 - 32816123
9832