Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32820059_32820527_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32820059 - 32820527

Intron Length:

469

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTGTAT

5'SS Class:

major

3'SS Sequence:

TCCTCCATCGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAC

U12 Branch Point Sequence:

TCTGTCTTAACA

Flanking Amino Acid:

RQRCGLDNAKQEDRPPLTSL

Intron Amino Acid Position:

1954

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

70.2

36.1

Major BPS

77.1

0.67

77.9

32.2

Major PPT

70.8

0.47

0.8

65.9

28.4

Minor 5ss

44.6

-0.6

3.2

64.1

47.4

Minor BPS

74.7

0.77

1.3

78.35

38.8

Associated Gene:

Gene:

CKAP5

Ensembl Gene ID:

ENSAPLG00000011076

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040394

32819804 - 32835448

15645

ENSAPLT00000011658

32819804 - 32857566

37763