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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32825527_32826218_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32825527 - 32826218
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAATCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTTAAAT
Flanking Amino Acid:
INTSIQALAQIDEVLRQEDK
Intron Amino Acid Position:
1564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.9
0.54
0.9
71.7
37.9
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
72.8
0.79
1.3
84.4
36.4

Associated Gene:

Gene:
CKAP5
Ensembl Gene ID:
ENSAPLG00000011076
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040394
32819804 - 32835448
15645
ENSAPLT00000011658
32819804 - 32857566
37763