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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32832574_32833781_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32832574 - 32833781
Intron Length:
1208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTTTTTTTTTCA
Flanking Amino Acid:
KAGGASSKAKGVQGKKVLSK
Intron Amino Acid Position:
1138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.6
40.3
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
100
1.12
0.4
100
0
Minor 5ss
49.3
-0
2.5
64.8
46.5
Minor BPS
44.4
-0.4
3.5
74.12
37.8

Associated Gene:

Gene:
CKAP5
Ensembl Gene ID:
ENSAPLG00000011076
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011658
32819804 - 32857566
37763