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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32836059_32836708_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32836059 - 32836708
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AGCTTTTTATTC
Flanking Amino Acid:
KKENPFLRQELLGWLAEKLP
Intron Amino Acid Position:
998

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73.2
39.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.2
0.97
0.6
92.2
18.2
Minor 5ss
47
-0.3
3.1
66.9
44.7
Minor BPS
50.1
-0
1.5
56.23
37

Associated Gene:

Gene:
CKAP5
Ensembl Gene ID:
ENSAPLG00000011076
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011658
32819804 - 32857566
37763