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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32836838_32838722_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32836838 - 32838722
Intron Length:
1885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACGC
5'SS Class:
major
3'SS Sequence:
CTTTTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTCTTCTTAAAT
Flanking Amino Acid:
PVITVLGDSKNNVRAAALAT
Intron Amino Acid Position:
955

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
60.8
44.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
88.3
0.86
0.8
83.2
31.9
Minor 5ss
30.9
-2.2
3.3
42.1
44.7
Minor BPS
78
0.96
1.3
88.72
36.1

Associated Gene:

Gene:
CKAP5
Ensembl Gene ID:
ENSAPLG00000011076
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011658
32819804 - 32857566
37763