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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32839855_32840207_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32839855 - 32840207
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAAGC
5'SS Class:
strong_major
3'SS Sequence:
GTGTTGCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
AAAATAGCAATT
Flanking Amino Acid:
LSQIDAEFEKMQGQTAPAPT
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
71.6
38.5
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
75.7
0.58
1
65.9
45.3
Minor 5ss
39.9
-1.1
2.8
52.3
44.5
Minor BPS
37.4
-0.8
2.1
50.58
36.8

Associated Gene:

Gene:
CKAP5
Ensembl Gene ID:
ENSAPLG00000011076
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011658
32819804 - 32857566
37763