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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32842203_32842491_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
32842203 - 32842491
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGAT
5'SS Class:
strong_major
3'SS Sequence:
ACGAACGTTGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
CTGTTACGAACG
Flanking Amino Acid:
KPGWKETNFQVMQMKLHIVA
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
77
31.4
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
59.9
0.22
1.1
50.5
42.9
Minor 5ss
32.2
-2
3.5
47.2
48.2
Minor BPS
42.9
-0.6
2
49.7
43.9

Associated Gene:

Gene:
CKAP5
Ensembl Gene ID:
ENSAPLG00000011076
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011658
32819804 - 32857566
37763