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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32843925_32845081_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32843925 - 32845081
Intron Length:
1157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GGTGTGTTAACC
Flanking Amino Acid:
TKEIFESELSIEVCEEKAAA
Intron Amino Acid Position:
590

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
73.9
0.54
1
66.7
39.3
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
49.8
-0
2.2
63.16
42.4

Associated Gene:

Gene:
CKAP5
Ensembl Gene ID:
ENSAPLG00000011076
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011658
32819804 - 32857566
37763