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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32846278_32846693_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32846278 - 32846693
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTGAGTTTA
5'SS Class:
major
3'SS Sequence:
AACCATTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
ADVDKLKLDRIKECAEKVEL
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
73.1
34
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
63
0.29
1.1
57.8
42
Minor 5ss
40.3
-1.1
3
49.9
46.4
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
CKAP5
Ensembl Gene ID:
ENSAPLG00000011076
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011658
32819804 - 32857566
37763