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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32846823_32847617_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32846823 - 32847617
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAG
5'SS Class:
major
3'SS Sequence:
TATTTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTGTAT
U12 Branch Point Sequence:
GTTGCGTTATGT
Flanking Amino Acid:
LKPFCAALLKHINDSAPEVR
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
64.9
41
Major BPS
50.1
0
1.4
51.4
43.9
Major PPT
86.9
0.83
0.7
81.7
29.8
Minor 5ss
30.7
-2.2
3.1
38.3
46.6
Minor BPS
44.4
-0.3
2.5
68.06
48.5

Associated Gene:

Gene:
CKAP5
Ensembl Gene ID:
ENSAPLG00000011076
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011658
32819804 - 32857566
37763