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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32847783_32847915_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32847783 - 32847915
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCAAACATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCCTCTGAAAA
Flanking Amino Acid:
QEAIDAIFLTTTLQNISEDI
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
74.5
37.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
63.1
0.3
1
55.7
39.4
Minor 5ss
36.9
-1.5
2.7
46.9
41.8
Minor BPS
56
0.18
1.6
66.83
39.1

Associated Gene:

Gene:
CKAP5
Ensembl Gene ID:
ENSAPLG00000011076
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011658
32819804 - 32857566
37763