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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32848006_32850883_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32848006 - 32850883
Intron Length:
2878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGGAT
U12 Branch Point Sequence:
AATGGATTGACT
Flanking Amino Acid:
RKKFGQYAGHVVPTILEKFK
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
80
34.8
Major BPS
54.8
0.12
1.4
55.1
42.1
Major PPT
80.7
0.69
0.7
76.1
26.2
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
47.2
-0.1
2.1
67.44
43.2

Associated Gene:

Gene:
CKAP5
Ensembl Gene ID:
ENSAPLG00000011076
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011658
32819804 - 32857566
37763