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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32855653_32856776_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32855653 - 32856776
Intron Length:
1124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
GTTCACTTAAAC
Flanking Amino Acid:
AYVENAHVAGKTTGEVASGV
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
69
0.47
1
69.9
32.6
Major PPT
89.7
0.89
0.6
88.2
21.7
Minor 5ss
37.8
-1.4
2.7
46.1
36
Minor BPS
62.1
0.36
1.6
71.75
38.2

Associated Gene:

Gene:
CKAP5
Ensembl Gene ID:
ENSAPLG00000011076
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011658
32819804 - 32857566
37763