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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32856971_32857509_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32856971 - 32857509
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACAC
5'SS Class:
major
3'SS Sequence:
CTTTTGCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ATGCATTTGACT
Flanking Amino Acid:
LPIDQKCEHKLWKARLNGYE
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
66
40.1
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
85.5
0.8
0.8
76.9
37.3
Minor 5ss
30.9
-2.2
3.3
41.2
45.5
Minor BPS
56.5
0.29
1.5
71.75
39.1

Associated Gene:

Gene:
CKAP5
Ensembl Gene ID:
ENSAPLG00000011076
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011658
32819804 - 32857566
37763