About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32875077_32876846_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32875077 - 32876846
Intron Length:
1770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTTTTTCACT
Flanking Amino Acid:
MYNQLCYKKETGPDHSYTKE
Intron Amino Acid Position:
1734

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
71.4
0.48
0.8
69.3
31.4
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
66.4
0.6
1.7
83.79
37.4

Associated Gene:

Gene:
LRP4
Ensembl Gene ID:
ENSAPLG00000009787
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010282
32874741 - 32912588
37848