About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32876989_32877519_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32876989 - 32877519
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTTTCTAACA
Flanking Amino Acid:
LLLIAAFIIYRHNKSKFTDP
Intron Amino Acid Position:
1686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
81
0.7
0.7
73.9
31.3
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
70.7
0.64
1.6
83.44
30.4

Associated Gene:

Gene:
LRP4
Ensembl Gene ID:
ENSAPLG00000009787
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010282
32874741 - 32912588
37848