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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32879376_32879883_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32879376 - 32879883
Intron Length:
508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GATTTAAAAATT
Flanking Amino Acid:
IIVVSPQRQTGTNACGVNNG
Intron Amino Acid Position:
1597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
75.1
41.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
85.7
0.8
0.8
77.7
36.7
Minor 5ss
34.5
-1.8
2.8
42.5
44.3
Minor BPS
44.1
-0.3
2
63.76
40.4

Associated Gene:

Gene:
LRP4
Ensembl Gene ID:
ENSAPLG00000009787
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010282
32874741 - 32912588
37848