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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32881781_32883158_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32881781 - 32883158
Intron Length:
1378

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTACTTCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TGATCCTTAAAC
Flanking Amino Acid:
IQAVDRARPLGFNKCGFRNG
Intron Amino Acid Position:
1293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.2
38.5
Major BPS
76.2
0.65
1
67
39.8
Major PPT
70.8
0.47
1
70.9
33.7
Minor 5ss
34.7
-1.7
2.8
35.3
41.4
Minor BPS
75.7
0.79
1.3
78
36.8

Associated Gene:

Gene:
LRP4
Ensembl Gene ID:
ENSAPLG00000009787
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010282
32874741 - 32912588
37848