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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32883792_32883874_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32883792 - 32883874
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTTAGTGTT
5'SS Class:
major
3'SS Sequence:
TGCTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AATTCCATAATA
Flanking Amino Acid:
PRAIALYHEMGYMYWTDWGE
Intron Amino Acid Position:
1163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
77.3
37.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
80.4
0.68
0.8
73.5
37.1
Minor 5ss
34.5
-1.8
3.2
42.9
44
Minor BPS
69
0.59
1.5
76.41
34

Associated Gene:

Gene:
LRP4
Ensembl Gene ID:
ENSAPLG00000009787
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010282
32874741 - 32912588
37848