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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32885183_32885839_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32885183 - 32885839
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CAACTTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CCGTTTTCAACT
Flanking Amino Acid:
LQSDGKTCSHGMTSFLIFAR
Intron Amino Acid Position:
1030

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
75.5
0.57
0.9
69.4
36.2
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
55.5
0.25
1.6
66.75
44.7

Associated Gene:

Gene:
LRP4
Ensembl Gene ID:
ENSAPLG00000009787
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010282
32874741 - 32912588
37848