Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32886409_32886749_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

32886409 - 32886749

Intron Length:

341

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGAGG

5'SS Class:

strong_major

3'SS Sequence:

GTGATCTGACCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

GTGATCTGACCA

Flanking Amino Acid:

YASLDGSNRKVLIGSNLPHP

Intron Amino Acid Position:

923

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

59.2

0.21

1.1

51.5

46.8

Minor 5ss

31.7

-2.1

3.1

39.7

45.9

Minor BPS

47.4

-0.2

1.8

57.35

41.8

Associated Gene:

Gene:

LRP4

Ensembl Gene ID:

ENSAPLG00000009787

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010282

32874741 - 32912588

37848