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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32888685_32889259_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32888685 - 32889259
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTGT
5'SS Class:
major
3'SS Sequence:
TCTTTTTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
ATCACATTAATG
Flanking Amino Acid:
RAKWDGSSQEVVVDTSLESP
Intron Amino Acid Position:
793

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.9
42.9
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
83.9
0.76
0.8
84.6
30.4
Minor 5ss
36.7
-1.5
3.6
56
48.2
Minor BPS
55.7
0.04
1.7
59.8
42

Associated Gene:

Gene:
LRP4
Ensembl Gene ID:
ENSAPLG00000009787
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010282
32874741 - 32912588
37848