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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32891088_32891415_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32891088 - 32891415
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAC
5'SS Class:
strong_major
3'SS Sequence:
ACATCCATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AATCCCTTTATT
Flanking Amino Acid:
GRNRKAVISQGLPHPFAITV
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
83.8
27.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
70.5
0.46
0.9
62.4
37.7
Minor 5ss
35.4
-1.7
2.8
44.9
43.2
Minor BPS
63.9
0.52
1.6
77.28
39

Associated Gene:

Gene:
LRP4
Ensembl Gene ID:
ENSAPLG00000009787
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010282
32874741 - 32912588
37848