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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32891634_32891973_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32891634 - 32891973
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGCCTCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GTTTTTCTAACC
Flanking Amino Acid:
PRAIALHPMEGTIYWTDWGN
Intron Amino Acid Position:
550

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
78.8
0.65
0.8
70
36.5
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
64.2
0.43
1.6
75.34
34.8

Associated Gene:

Gene:
LRP4
Ensembl Gene ID:
ENSAPLG00000009787
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010282
32874741 - 32912588
37848