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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32893813_32893980_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32893813 - 32893980
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTAACATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTGTCTGTAACA
Flanking Amino Acid:
RLLEDGRSCQDVNECAEEGY
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
83.9
30.3
Major BPS
79
0.72
1
78.4
31.2
Major PPT
66.7
0.38
1
59.5
40.8
Minor 5ss
39.3
-1.2
3.3
57.3
47.4
Minor BPS
65.5
0.48
2
78.71
38.4

Associated Gene:

Gene:
LRP4
Ensembl Gene ID:
ENSAPLG00000009787
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010282
32874741 - 32912588
37848