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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32894721_32897022_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32894721 - 32897022
Intron Length:
2302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGGCCT
5'SS Class:
major
3'SS Sequence:
CCTCTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTCCTCTTATTG
Flanking Amino Acid:
NSDEENCENTGTPQCAPDQF
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.2
60.8
43.4
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
82.2
0.72
0.8
76.7
30.3
Minor 5ss
35.8
-1.6
3.2
49.2
46.6
Minor BPS
54.4
0
1.7
59.89
42.6

Associated Gene:

Gene:
LRP4
Ensembl Gene ID:
ENSAPLG00000009787
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010282
32874741 - 32912588
37848