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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32897149_32897281_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32897149 - 32897281
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TTGGGTCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
TCTTGCTCACCT
Flanking Amino Acid:
CDDQSDERNCTTSMCTADQF
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
69
35.8
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
69.9
0.45
0.9
66.2
40.8
Minor 5ss
32.1
-2
3.3
47.2
42.3
Minor BPS
49.8
0.07
2.2
75.75
46.8

Associated Gene:

Gene:
LRP4
Ensembl Gene ID:
ENSAPLG00000009787
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010282
32874741 - 32912588
37848