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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32900937_32902976_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32900937 - 32902976
Intron Length:
2040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTCAC
5'SS Class:
major
3'SS Sequence:
CGTGTCCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTGTCTTCACCT
Flanking Amino Acid:
CEDDSDEQDCPPRECEEDEF
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.4
63.6
42.9
Major BPS
77.5
0.68
1
79.6
33
Major PPT
73.7
0.53
0.9
66.1
35.8
Minor 5ss
36.4
-1.5
3
49.2
40.2
Minor BPS
59.7
0.38
1.9
79.76
42.7

Associated Gene:

Gene:
LRP4
Ensembl Gene ID:
ENSAPLG00000009787
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010282
32874741 - 32912588
37848