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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32909029_32912574_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
32909029 - 32912574
Intron Length:
3546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTTAAAATA
5'SS Class:
weak_major
3'SS Sequence:
CAGGTGTATCGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TTCCTTTGCAGG
Flanking Amino Acid:
MYISVSTECSCGRN
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.7
0.02
1.2
59.1
39.5
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
45.6
-0.2
1.7
42.9
46.5
Minor 5ss
34.8
-1.7
3
42.7
43.9
Minor BPS
39.4
-0.9
2
44.3
42.2

Associated Gene:

Gene:
LRP4
Ensembl Gene ID:
ENSAPLG00000009787
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010282
32874741 - 32912588
37848