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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_32969250_32985782_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32969250 - 32985782
Intron Length:
16533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTATCTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACTTTATCT
Flanking Amino Acid:
QYGIARFFTEYFNSVRQGTH
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76.2
32.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.1
0.72
0.8
76.8
31.8
Minor 5ss
37.9
-1.4
2.7
45.5
37.1
Minor BPS
71.6
0.76
1.6
88.62
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028080
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021923
32965641 - 32988167
22527