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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_3297213_3308903_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3297213 - 3308903
Intron Length:
11691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTCTTTTTAAAA
Flanking Amino Acid:
IVDTPYSRDQVVTIMANMSV
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.2
0.5
1
68.4
40.3
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
63.1
0.41
1.4
67.32
39.7

Associated Gene:

Gene:
INSC
Ensembl Gene ID:
ENSAPLG00000008621
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044544
3219978 - 3315218
95241
ENSAPLT00000018703
3216491 - 3315142
98652
ENSAPLT00000008966
3215995 - 3315142
99148