About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33032439_33033997_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33032439 - 33033997
Intron Length:
1559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAATA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTAATAGACAA
Flanking Amino Acid:
LESLCDRSKYSCPPCALVKE
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
82.2
0.72
0.7
76.4
32.2
Minor 5ss
43.1
-0.8
2.9
57.4
46.9
Minor BPS
37.9
-0.9
1.9
52.5
38.7

Associated Gene:

Gene:
C11orf49
Ensembl Gene ID:
ENSAPLG00000009411
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009807
33024132 - 33037149
13018