Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33042798_33043214_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33042798 - 33043214

Intron Length:

417

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTACGTCTG

5'SS Class:

major

3'SS Sequence:

CTTTCTTTCTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

CTTTTTGTATGT

Flanking Amino Acid:

KKKPGAAKKGLGAKKGLGAQ

Intron Amino Acid Position:

152

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

1.1

63.8

47.8

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

88.6

0.87

0.6

87.8

22.3

Minor 5ss

36.3

-1.6

3.2

41.3

45.1

Minor BPS

43.5

-0.4

2.4

66.05

45.6

Associated Gene:

Gene:

ARFGAP2

Ensembl Gene ID:

ENSAPLG00000008452

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008849

33039806 - 33047713

7908