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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33046902_33046990_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33046902 - 33046990
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAG
U12 Branch Point Sequence:
TCTTGCAGGATA
Flanking Amino Acid:
SAAMAKYGTDLLIDGLSGAP
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
73.6
37
Major BPS
45.5
-0.2
1.7
60.7
45.9
Major PPT
90.5
0.91
0.6
88.8
20.4
Minor 5ss
36.9
-1.5
2.9
47.3
41.1
Minor BPS
44.5
-0.4
2.1
59.67
40.5

Associated Gene:

Gene:
ARFGAP2
Ensembl Gene ID:
ENSAPLG00000008452
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008849
33039806 - 33047713
7908