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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33047123_33047364_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33047123 - 33047364
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTGAAT
U12 Branch Point Sequence:
GTGGACTGAATG
Flanking Amino Acid:
MQVGSNANATAFFRQHGCT
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.2
43
Major BPS
53.2
0.08
1.4
63.6
40.3
Major PPT
87.2
0.84
0.7
84.7
30.2
Minor 5ss
33.1
-1.9
3.2
43.9
43.7
Minor BPS
46.7
-0.3
1.8
49.94
44

Associated Gene:

Gene:
ARFGAP2
Ensembl Gene ID:
ENSAPLG00000008452
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008849
33039806 - 33047713
7908