About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_33062360_33063123_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33062360 - 33063123
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCAGCC
5'SS Class:
major
3'SS Sequence:
TTTTTGGTCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTTTTGGTCATA
Flanking Amino Acid:
HQHLNLSTSESFQALYRDLY
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.2
58.3
42
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
77
0.61
0.9
72.4
37.8
Minor 5ss
36.2
-1.6
3.5
51.7
45
Minor BPS
42.2
-0.6
2.8
65.77
41.9

Associated Gene:

Gene:
PACSIN3
Ensembl Gene ID:
ENSAPLG00000007958
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008312
33058408 - 33065715
7308